Khoury, C. K., B. Heider, N. P. Castañeda-Álvarez, H. A. Achicanoy, C. C. Sosa, R. E. Miller, R. W. Scotland, J. R. I. Wood, G. Rossel, L. A. Eserman, R. L. Jarret, G. C. Yencho, V. Bernau, H. Juarez, S. Sotelo, S de Haan, and P. C. Struik. 2015. Distributions, ex situ conservation priorities, and genetic resource potential of crop wild relatives of sweetpotato (Ipomoea batatas (L.) Lam. I. series Batatas). Frontiers in plant science. 6: 251.
Eserman, L. A., G. P. Tiley, R. L. Jarret, J.H. Leebens-Mack, and R. E. Miller. 2014. Phylogenetics and diversification of morning glories (tribe Ipomoeeae, Convolvulaceae) based on whole plastome sequences. American Journal of Botany. 101: 1-12.
Smith, S. D., R. E. Miller, S. P. Otto, R. G. FitzJohn, and M. D. Rausher. 2010. The effects of flower color transitions on diversification rates in morning glories (Ipomoea subg. Quamoclit, Convolvulaceae). Pp. 220-226 in M. Long, H. Gu and Z. Zhou, Darwin’s Heritage Today: Proceedings of the Darwin 2010 Bejing International Conference. Higher Education Press, Beijing.
Lau, J. A., R. E. Miller, and M. D. Rausher. 2008. Selection through male function favors smaller floral display size in the common morning glory, Ipomoea purpurea (Convolvulaceae). American Naturalist 172:63-74.
Juenger, T., T. C. Morton, R. E. Miller, and J. Bergelson. 2005. Scarlet gilia resistance to insect herbivory: the effect of early season browsing, plant apparency, and phytochemistry on patterns of seed fly attack. Evolutionary Ecology 19:79-101.
Miller, R.E. 2004. A modern synthesis of relationships among plants. A book review of Plant Systematics: a phylogenetic approach. Cladistics 20:296-298.
Miller, R.E., J. A. McDonald, and P. S. Manos. 2004. Systematics of Ipomoea subgenus Quamoclit based on ITS sequence data and a Bayesian phylogenetic analysis. American Journal of Botany 91: 1208-1218.
Miller, R. E., T. R. Buckley, and P. S. Manos. 2002. An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference. Systematic Biology 51: 740-753.
Huelsenbeck, J. P., B. Larget, R. E. Miller, and F. Ronquist. 2002. Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology 51:673-688.
Manos, P. S., R. E. Miller, and P. Wilkin. 2001. Phylogenetic analysis of Ipomoea, Argyreia, Stictocardia, and Turbina suggests a generalized model of morphological evolution in morning glories. Systematic Botany 26:585-602.
Miller, R. E. and L. F. Huenneke. 2000a. Demographic variation in a desert shrub, Larrea tridentata, in response to a thinning treatment. Journal of Arid Environments 45: 315-323.
Miller, R. E. and L. F. Huenneke. 2000b. The relationship between density and demographic variation within a population of Larrea tridentata. Southwestern Naturalist 45: 313-321.
Miller, R. E., M. D. Rausher, and P. S. Manos. 1999. Phylogenetic systematics of Ipomoea (Convolvulaceae) based on ITS and waxy sequences. Systematic Botany 24: 209-227.
Rausher, M. D., R. E. Miller, and P. Tiffin. 1999. Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway. Molecular Biology and Evolution 16: 266-274.
Tiffin, P., R. E. Miller, and M. D. Rausher. 1998. Control of expression patterns of anthocyanin structural genes by two loci in the common morning glory. Genes and Genetic Systems 73: 105-110.
Miller, R. E. and L. F. Huenneke. 1996. Size decline in Larrea tridentata (creosotebush). Southwestern Naturalist 41: 248-250.
Benkman, C. W. and R. E. Miller. 1996. Morphological evolution in response to fluctuating selection. Evolution 50: 2499-2504.
Miller, R. E., J. M. Ver Hoef, and N. L. Fowler. 1995. Spatial heterogeneity in eight central Texas grasslands. Journal of Ecology 83: 919-928.
Miller, R. E. and N. L. Fowler. 1994. Life history variation and local adaptation within two populations of Bouteloua rigidiseta (Texas grama). Journal of Ecology 82: 855-864.
Miller, R. E. and N. L. Fowler. 1993. Variation in reaction norms among population of Bouteloua rigidiseta. Evolution 47: 1446-1455.
Miller, R. S. and R. E. Miller. 1971. Feeding activity and color preference of ruby-throated hummingbirds. Condor 73: 309-313.